Microbial Genomics Lab

Publications

PUBLICATIONS WITH DIGITAL OBJECT IDENTIFIER (DOI).

Serial No. Year of Publication Author Name Author Contribution Title DOI Journal Name Journal Index
1 2025 Han, C. Md-Mafizur Rahman., Kim, J. Ralf Nauen Co-author Integrated diagnostic approach using qPCR, ddPCR, and LAMP-based molecular tools for two leafhopper species identification (Nephotettix cincticeps and N. virescens). https://doi.org/10.1111/jen.13393     Journal of Applied Entomology SCI indexed, IF=2.2, Q2, Wiley-Blackwell
2 2025 Han, C. Md-Mafizur Rahman., Kim, J. Ralf Nauen Co-author Genome-wide analysis of detoxification genes conferring diamide insecticide resistance in Spodoptera exigua identifies CYP9A40. https://doi.org/10.1016/j.chemosphere.2024.143623   Chemosphere SCI indexed, IF=8.1, Q1, Elsevier
3 2024 Rizone Al Hasib, Md Chayan Ali, Md Shahedur Rahman, Md Mafizur Rahman, Fee Faysal Ahmed, Md Abdullah Al Mashud, Md Azizul Islam, Mohammad Abu Hena Mostofa Jamal Co-author A computational biology approach for the identification of potential SARS-CoV-2 main protease inhibitors from natural essential oil compounds. https://doi.org/10.12688/f1000research.73999.1   F1000Research IF ≈ 1.4 (Scopus/Scimago Impact Score), SJR ≈ 0.537, indexed in Scopus, PubMed/Medline, DOAJ, and Google Scholar (not a traditional Clarivate JCR Impact Factor in SCI/SCIE).
4 2024 Rahima Tanbin Tama, Md. Sakhawat Hossain, Md-Mafizur Rahman corresponding Author Harnessing the Power of Natural Products Against Bacterial Urinary Tract Infections: A Perspective Review for Cultivating Solutions. https://doi.org/10.1016/j.hsr.2024.100199   Health Science Review SCIE indexed, Elsevier
5 2024 Munjia MA, Moni RJR, Tama RT, *Md-Mafizur Rahman corresponding Author Investigating the presence of multidrug-resistant Escherichia coli in raw mutton from open marketplaces.   https://doi.org/10.47440/JAFE.2024.5301   JAFE, V5, No.3. P1-6. Indexed
6 2024 Kim, J., Md-Mafizur Rahman., Han, C. Co-author Genome-wide exploration of metabolic-based pyrethroid resistance mechanism in Helicoverpa armigera. https://doi.org/10.1101/2023.12.18.572109   Journal of Pest Science SCI indexed, IF=4.3, Q1, Springer.
7 2024 IslamMJ1,2, HossainMS1,Tama RT1,Hilaly MR3,ParvinA1*, HossainMS4,RahmanMM1 Corresponding author COVID-19 Dynamics in Rajshahi Division: An RT-qPCR-Based Study https://doi.org/10.47440/JAFE.2024.5207   Journal of Agriculture, Food and Environment (JAFE)  
8 2024 Juil Kim, Md‐Mafizur Rahman, Changhee Han, Jiyeong Shin, Seung‐Joon Ahn C0-first author  Chromosome‐level genome assembly and comparative genomics shed light on Helicoverpa assulta ecology and pest management https://doi.org/10.1002/ps.8273   Pest Management Science IF ≈ 3.8–4.2, SJR ≈ 0.9–1.0, indexed in Scopus, Web of Science (SCI/SCIE), PubMed (via MEDLINE), and Google Scholar.
9 2024 Arya R, Haque AKMA, Shakya H, Billah MM, Parvin A, Md-Mafizur Rahman., Sakib KM, Faruquee HM, Kumar V, Kim JJ. Co-author Parkinson's Disease: Biomarkers for Diagnosis and Disease Progression. https://doi.org/10.3390/ijms252212379   Int J Mol Sci. SCIE indexed, IF=4.9, Q1, MDPI
10 2024 Mst Tania Khatun, Humayan Kabir Rana, *Md-Mafizur Rahman., Md Habibur Rahman. corresponding Author Bioinformatics and systems biology approaches to identify molecular targets and pathways shared between Schizophrenia and bipolar disorder. https://doi.org/10.1016/j.imu.2024.101556   Informatics in Medicine Unlocked.V. 49, 2024, 101556. SCIE indexed, IF=4.21, Q2, Elsevier  
11 2024 Fahim, W Hassan, A Afsin, MM Rahman, MT Rahman, SJ Lim, Y Oh, *Rahman, Md Mafizur. corresponding Author Molecular identification of fruit bats, natural host of Nipah virus in Bangladesh, based on DNA barcode. https://doi.org/10.5141/jee.24.003   Journal of Ecology and Environment. Scopus, IF=2.4, Q2, BMC
12 2024 Sabbir Zia, Md-Mehedi Sumon, Md-Ashiqur Ashik, Abul Basar, Sangjin Lim, Yeonsu Oh, Yungchul Park, Md-Mafizur Rahman corresponding Author Potential Inhibitors of Lumpy Skin Disease’s Viral Protein (DNA Polymerase): A Combination of Bioinformatics Approaches https://doi.org/10.3390/ani14091283   Animals IF ≈ 2.7, SJR ≈ 0.733, indexed in Scopus, Web of Science (SCI/SCIE), PubMed/PubMed Central, DOAJ, and Google Scholar
13 2024 Md. Shohorab Hossain, Md. Abdullah Al Mamun, Md-Mafizur Rahman Co-author Comparative Genome Study of Multidrug-resistant Serratia 2 marcescens strain IU-BTGE-M-3 Isolated from a Diarrheal Patient. https://doi.org/10.1101/2024.10.18.619060   bioRxiv 2024.10.18.619060  
14 2024 Rahman, Md Mafizur; Omoto, C.; Kim, J. first author Genome-Wide Exploration of Long Non-Coding RNAs of Helicoverpa armigera in Response to Pyrethroid Insecticide Resistance. https://doi.org/10.3390/insects15030146   Insects 2024, 15, 146. SCIE indexed, IF=3.141, Q1
15 2024 Rahman, Md Mafizur, Sangjin, L., & Chul, P. Y. first author Prevalence of Salmonella spp. and Escherichia coli in the feces of free-roaming wildlife throughout South Korea. https://doi.org/10.1371/journal.pone.0281006   PloS one, 19(2), e0281006. SCI, IF=3.7, Q1, Public Library of Science
16 2024 Minkyu Jeong, Murtaza Khan, Md‐Mafizur Rahman, Moniruzzaman Kabir, Nakjung Choi, JaeBuhm Jeon, Juil Kim Co-author Integrated Diagnostic Approach Using qPCR, ddPCR and LAMP‐Based Molecular Tools for Two Leafhopper Species Identification (Nephotettix cincticeps and Nephotettix virescens) https://doi.org/10.1111/jen.13393   Journal of Applied Entomology IF ≈ 1.8, SJR ≈ 0.56, indexed in Scopus, Web of Science (SCI/SCIE), and Google Scholar
17 2023 Shin, J.; Rahman, Md Mafizur.; Kim, J.; Marcombe, S.; Jung, J. Co-author Genetic Diversity of Dengue Vector Aedes albopictus Collected from South Korea, Japan, and Laos. https://doi.org/10.3390/insects14030297   Insects 2023, 14, 297. SCIE indexed, IF=3.141, Q1
18 2023 Jeon, J.; #Rahman, Md Mafizur.; Han, C.; Shin, J.; Sa, K.J.; Kim, co-first author   J. Spodoptera frugiperda (Lepidoptera: Noctuidae) Life Table Comparisons and Gut Microbiome Analysis Reared on Corn Varieties. https://doi.org/10.3390/insects14040358   Insects, 14, 358.       SCIE indexed, IF=3.141, Q1, MDPI
19 2023 Juil Kim, #Rahman, Md Mafizur, Ramasamy, S., Kwon, M. co-first author Genome-wide exploration of metabolic-based pyrethroid resistance mechanism in Helicoverpa armigera. https://doi.org/10.1007/s10340-024-01797-8   Journal of Pest Science SCIE index, IF=4.8, Q1, Springer
20 2023 Rahman, Md Mafizur, Nam H, Choi N, Kim J. First author Development of Molecular-Based Species Identification and Optimization of Reaction Conditions for Molecular Diagnosis of Three Major Asian Planthoppers (Hemiptera: Delphacidae). https://doi.org/10.3390/insects14020124   Insects. 2023 Jan 25;14(2):124. SCIE indexed, IF=3.141, Q1
21 2023 Juil Kim, #Md-Mafizur Rahman, A-Young Kim, Srinivasan Ramasamy, Min Kwon, Yonggyun Kim. co-first author Exaptation of I4760M mutation in ryanodine receptor of Spodoptera exigua (Lepidoptera: Noctuidae): lessons from museum and field samples. https://doi.org/10.1016/j.pestbp.2023.105579   Pesticide Biochemistry and Physiology. SCI indexed, IF =4.96, Q1
22 2023 Kim, J., Rahman, Md Mafizur.; Kim, A. Y., Ramasamy, S., Kwon, M., & Kim, Y. Co-author Genome, host genome integration, and gene expression in Diadegma fenestrale ichnovirus from the perspective of coevolutionary hosts. https://doi.org/10.3389/fmicb.2023.1035669   Frontiers in microbiology, 14, 1035669. SCI indexed, IF=6.064, Q1  
23 2023 Ali Hossain, M., Asa, T. A., Rabiul Auwul, M., Aktaruzzaman, Rahman, Md., Mafizur, M., Rahman, M. Z., & Moni, M. A. Co-author The pathogenetic influence of smoking on SARS-CoV-2 infection: Integrative transcriptome and regulomics analysis of lung epithelial cells.   https://doi.org/10.1016/j.compbiomed.2023.106885   Computers in biology and medicine, 159, 106885. SCI indexed, IF=7.0, Q1, Elsevier
24 2023 Juil Kim, Md-Mafizur Rahman, A Kim, Ramasamy Srinivasan, Min Kwon, Yonggyun Kim Co-first author Genome, host genome integration, and gene expression in Diadegma fenestrale ichnovirus from the perspective of coevolutionary hosts https://doi.org/10.3389/fmicb.2023.1035669   Frontiers in Microbiology IF ≈ 4.5, SJR ≈ 1.17, indexed in Scopus, Web of Science (SCI/SCIE), PubMed/PubMed Central (all articles receive a PMCID), DOAJ, and Google Scholar
25 2022 Rahman, Md Mafizur, Lim, S. J., & Park, Y. C. First author Molecular Identification of Bacillus Isolated from Korean Water Deer (Hydropotes inermis argyropus) and Striped Field Mouse (Apodemus agrarius) Feces by Using an SNP-Based 16S Ribosomal Marker. https://doi.org/10.3390/ani12080979   Animals. SCIE indexed, IF=2.7, Q1, MDPI
26 2022 Rahman, Md Mafizur, Lim, S. J., & Park, Y. C. First author Genome-Wide Searching Single Nucleotide-Polymorphisms (SNPs) and SNPs-Targeting a Multiplex Primer for Identification of Common Salmonella Serotypes. https://doi.org/10.3390/pathogens11101075   Pathogens (Basel, Switzerland), 11(10), 1075. SCIE indexed, IF=3.3, Q2, MDPI
27 2022 Rahman, Md Mafizur, Lim, S. J., & Park, Y. C. First author Development of Single Nucleotide Polymorphism (SNP)-Based Triplex PCR Marker for Serotype-specific Escherichia coli Detection. https://doi.org/10.3390/pathogens11020115   Pathogens,11(2), 115 SCIE indexed, IF=4.53, Q2
28 2022 Ahmed, S., Ali, M. C., Ruma, R. A., Mahmud, S., Paul, G. K., Saleh, M. A., Alshahrani, M. M., Obaidullah, A. J., Biswas, S. K., Rahman, M. M., Rahman, Md Mafizur*, & Islam, M. R. Corresponding author Molecular Docking and Dynamics Simulation of Natural Compounds from Betel Leaves (Piper betle L.) for Investigating the Potential Inhibition of Alpha- Amylase and Alpha-Glucosidase of Type 2 Diabetes. https://doi.org/10.3390/molecules27144526     Molecules 27,14 4526. SCI indexed, IF=4.97, Q1
29 2022 Rashni Agarwala, Israt Jahan Maria, Promi Dewan, Rahman, Md Mafizur, Zubaer Hosen, Md. Adnan. Co-author Exploring the impact of daily food habit and modification of lifestyle for boosting immunity against COVID-19. https://doi.org/10.1016/j.heliyon.2022.e08983   Heliyon, 2022, 8 (2), e08983 SCI indexed, IF=3.4, Q1
30 2022 Ali, Md Chayan, Khatun, Mst Shanzeda, Jahan, Rahman, Md Mafizur, Mohammad Abu Hena Mostofa Jamal Co-author Syzygium aromaticum as a possible source of SARS-CoV-2 main protease inhibitors: Evidence from a computational investigation. https://doi.org/10.5455/jabet.2022.d109   J Adv Biotechnol Exp Ther. 2022; 5(1): 218-228   SCOPUS indexed, IF=1.77, Q3
31 2021 25.         Ali, Md Chayan, Khatun, Mst Shanzeda, Jahan, Sultana Israt, Das, Raju, Munni, Yeasmin Akter, *Rahman, Md Mafizur, Dash, Raju Corresponding author In silico design of epitope-based peptide vaccine against non-typhoidal Salmonella through immunoinformatic approaches. https://doi.org/10.1080/07391102.2021.1947381   J. Biomolecular Struc. Dynamics. 1-19. SCI indexed, IF=3.310, Q2, Taylor and Francis
32 2021 Md Mafizur Rahman, Md Azad, Obyedul Kalam, Jasim Uddain, Md Adnan, Md Ali, SK Al- Mujahidy, Md Roni, Zohurul Kadir, Mohammed Saifur Rahman, Md Islam, Ki Young Choi, Most Tahera Naznin First author Microbial Quality Assessment and Efficacy of Low-Cost Disinfectants on Fresh Fruits and Vegetables Collected from Urban Areas of Dhaka, Bangladesh. https://doi.org/10.3390/foods10061325   Foods 10(6):1325. SCIE indexed, IF=3.11, Q1, MDPI
33 2020 Md Mafizur Rahman, Sanjin Lim, Heuk Kim, Jay Cho, and Yung Park First author Prevalence data of diarrheagenic Escherichia coli in the fecal pellets of wild rodents using culture methods and PCR assay https://doi.org/10.1016/j.dib.2020.106439   Data in Brief. 33, December 2020, 106439 Scopus, IF=1.133, Q3, Elsevier
34 2020 Md. Chayan Ali1, Anjumana Jannati Nur, Mst. Shanzeda Khatun, Raju Dash, Md Mafizur Rahman*, Mohammad Minnatul Karim. Corresponding author Identification of potential SARS-CoV-2 main protease inhibitors from Ficus Carica Latex: An in-silico approach. https://doi.org/10.5455/jabet.2020.d157   J. Adv Biotechnol. Exp. Ther. 2020; 3(4): 57-67 Scopus Indexing, Q3
35 2019 M. Mafizur Rahman, Kwang bae Yoon & Yung Chul Park First author Structural characteristics of a mitochondrial control region from Myotis bat (Vespertilionidae) mitogenomes based on sequence datasets. https://doi.org/10.1016/j.dib.2019.103830   Data in Brief. 24, June 2019, 103830 Scopus, IF=1.133, Q3, Elsevier
36 2018 Md. Rezanur Rahman, Tania Islam, Beste Turanli, Toyfiquz Zaman, Hossain Md. Faruquee, M. Mafizur Rahman, Md. Nurul Haque Mollah, Kazim Yalcin Arga, Mohammad Ali Moni, and Esra Gov Co-author Network-Based Approach to Identify Molecular Signatures and Therapeutic Agents in Alzheimer’s disease. https://doi.org/10.1016/j.compbiolchem.2018.12.011   Computational Biology and Chemistry. 78: 431-439 SCI Indexing, IF=1.85, Q2, Elsevier
37 2018 M. Mafizur Rahman, Yoon K B, Lim S J, Jeon M G, Kim HJ, Kim HY, Park YC. First author Molecular detection by analysis of the 16S rRNA gene of fecal coliform bacteria from the two Korean Apodemus species (Apodemus agrarius and A. peninsulae). https://doi.org/10.4238/gmr16029510   Genet Mol Res. 16 (2). Scopus Indexing, IF=0.78, Q4
38 2017 MM Rahman, KB Yoon, SJ Lim, MG Jeon, HJ Kim, HY Kim, JY Cho, HM Chae, YC Park First author Molecular detection by analysis of the 16S rRNA gene of fecal coliform bacteria from the two Korean Apodemus species (Apodemus agrarius and A. peninsulae) https://doi.org/10.4238/gmr16029510   Genetics and molecular research   IF ≈ 0.2 (Clarivate JCR Emerging Sources Citation Index), SJR ≈ 0.157 (Scopus), indexed in Scopus and Web of Science (ESCI), and Google Scholar
39 2016 M Mafizur Rahman, Kwang Bae Yoon, Ji Young Kim, Mohamed Zakaria Hussin, Yung Chul Park First author Complete mitochondrial genome sequence of the Indian pipistrelle Pipistrellus coromandra (Vespertilioninae) https://doi.org/10.1080/19768354.2016.1150877   Animal Cells and Systems IF ≈ 3.2, SJR ≈ 0.775, indexed in Scopus, Web of Science (SCI/SCIE), DOAJ, and Google Scholar.
40 2016 Kwang Bae Yoon, M Mafizur Rahman, Yung Chul Park Co-first author Acoustic Species Identification of Korean Myotis Bats (Chiroptera: Vespertilionidae) https://doi.org/10.7747/JFES.2016.32.1.68   Journal of forest and environmental science  
41 2015 Sudhangshu Biswas, Apurba Roy, Rezuanul Islam, Nadia Alam, Samanandro Chowdhury, Mafizur Rahman Corresponding author Isolation of seed-borne and seed associated fungi of Lablab purpureus (L.) sweet and their biological control https://doi.org/10.15414/JMBFS.2015.5.2.136-141   The Journal of Microbiology, Biotechnology and Food Sciences IF ≈ 1.15 (Scopus‑based Impact Score), SJR ≈ 0.243, indexed in Scopus, Web of Science Emerging Sources Citation Index (ESCI), DOAJ, and Google Scholar.
42 2015 Shahriar Mahmud, Md Morshedul Alam, Aneesa Ansari, Md Mafizur Rahman, Md Khorshed Alam, Md Kamruzzaman Pramanik Co-author Quality Improvement of Fresh-cut-fruits by Gamma Radiation for Immune-compromised Patients DOI: 10.13040/IJPSR.0975-8232.6(8).3306-13 International Journal of Pharmaceutical Sciences and Research  
43 2014 Md Azizul Islam, Md Abul Kalam Azad, Md Rezaul Karim, Sudhangsu Kumar Biswas, Md Mostafizur Rahmam, Md Mafizur Rahman Corresponding author Antibacterial Effects of Ocimum Sanctum L Leaves, Flowers and Shoots against Bacillus Spp from Soil http://dx.doi.org/10.15590/mjmbr/2014/v1i1/53718   Malaysian Journal Of Medical And Biological Research  
44 2014 Md Azizul Islam Mostofa Jamal, Md Mafizur Rahman Corresponding author Solid state fermentation of Lathyrus sativus and sugarcane bagasse by Pleurotus sajor-caju   Int. J. Agron. Agric. Res.  
45 2013 Mst Muslima Khatun, MM Rahman, PK Roy Co-first author In vitro regeneration and field evaluation of Carnation (Dianthus caryophyllus L.) through shoot tip and node culture   Journal of applied Science and Technology  
46 2013 M Mafizur Rahman, GM Sala Uddin, M Mizanur Rahman First author Efficacy of various organic extracts of Piper betle L. leaves against Bacillus spp. from soil   Journal of Nature Science and Sustainable Technology  
47 2013 Md Rakibul Hasan, Md Mehedi Hassan, Monokesh Kumer Sen, Akter Kohinoor, Md Mafizur Rahman Corresponding author Microbiological risk assessment of frozen fishes in relation to their effects of different processing treatments http://dx.doi.org/10.12692/ijb/3.8.136-143   Int. J. Biosci  
48 2013 Shahriar Mahmud, Md Mehedi Hassan, Md Moniruzzaman, Nirupam Biswas, Md Mafizur Rahman, Md Enamul Haque Co-author Study on the accumulation of copper from soil by shoots and roots of some selective plant species http://dx.doi.org/10.12692/ijb/3.6.68-75   International Journal of Biosciences  
49 2013 Masum ZH Gazi, Sharkar Priyanka, Nayeem Md Abu, Rahman M Mafizur, Rahman M Mizanur Corresponding author Medicinal plants used by Kabiraj of fourteen villages in Jhenaidah district, Bangladesh   Global Journal of Research on Medicinal Plants & Indigenous Medicine    
50 2012 M Mafizur Rahman, SM Jakaria, SK Biswas, Rokibul Islam First author Phytormediation of copper toxicity in soil by various corn and vegetables of Bangladesh   AJASE